Software

Here you can find software developed by members of the lab.

prot4EST
Accurately translate ESTs (remember them?). Will also work with RNA-seq data.
Author: James Wasmuth
Citation: BMC Bioinformatics 2004
Link: http://www.compsysbio.org/lab/james/prot4EST_rl3.1b.tgz

Figmop
Having trouble finding your favourite genes in a draft genome assembly? Figmop can help.
Author: David Curran
Citation: Bioinformatics 2014
Link: https://github.com/dave-the-scientist/figmop

Kablammo
A great visualization tool for BLAST output. Helps you understand what your searches are telling you. Exports pretty figures too!
Author: Jeffrey Wintersinger
Citation: Bioinformatics 2014
Link: http://kablammo.wasmuthlab.org/

Rdepth_gene
A javascript visualization of gene depth coverage for gene models
Author: Dave Curran
Citation: in prep.
Link: http://rdepth.wasmuthlab.org/gdepth

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